Ninja Gaiden 3: Razor's Edge [BLJM61010]

I can confirm that with libsail and libssl I can bypass the Tecmo logo and go to the main menu (after booting it like 5 times), but as soon as I try to start story mode the game crashes, how many times did you have to boot it to actually go ingame?

As observed,

• 1st runner (No shader initiated before), I re-booted 2-3 times to bypass TEMCO Logo. It depends on your harddrive transfer speed.
  
• 2nd/3rd runner, I re-boot 1-2 times and so on (shader is built already).
  

For Story-Mode, use default Res. Scale 100% (720p) windowed for 1st time.  If hang/dark cutscenes, close game window. Re-boot game. story-mode will be rendered correctly. (in your case, repeating process might help)

Hint, Try moving your game & rpcs3 into SSD and re-test the process!!