Deadlocked

So this is an issue I've ran into with 3 different versions of RPCS3 and 2 different games and I was wondering if this is common. So I'll be playing a game that's running seemingly fine like Metal Gear HD Collection (Peace Walker) and I will randomly lose input on my controller. Nothing seems to be triggering it per say but it happens every time. The game will continue to play just fine but once I close RPCS3 I get an error saying "Some thread has probably deadlocked". I never hear anyone else talk about this problem so I thought maybe I'm missing a setting or something?

CPU: 9900K
GPU: 2080 SUPER
RAM: 16GB